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3. Clear missing variant from HaplotypeCaller

Thanks in advance. Please let me know if you need more examples like this one, I have a bunch 

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• Edu Andrés León
• November 06, 2020 08:11
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3. Clear missing variant from HaplotypeCaller

Hi Genevieve, thanks again for your help. These are the answers: 1) Whole genome 2) PCR amplified  3) The picture was made using bam files from the --bam-output parameter by the HaplotypeCaller  Th...

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• Edu Andrés León
• November 04, 2020 07:38
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3. Clear missing variant from HaplotypeCaller

Hi again, Finally I have been able to finish reviewing some variants. It is true that many of those I selected no longer appear, but it is true that now others appear and essentially the same thing...

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• Edu Andrés León
• October 30, 2020 13:20
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3. Clear missing variant from HaplotypeCaller

Dear Genevieve I'm rerunning the HaplotypeCaller with the options suggested in your first post. The others did not answer what I'm seeing in this analysis. Thanks for your help. Once it finished, I...

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• Edu Andrés León
• October 16, 2020 06:50
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