Rolf Schröder
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Variant not called by HaplotypeCaller (not called in father, but present in child)
Hi, I have a bam file where an expected variant (21:34923904C>T) is not called by HaplotypeCaller.I have followed the advice from https://gatk.broadinstitute.org/hc/en-us/articles/360043491652-When...
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Haplotype calls deletion followed by insertion instead of indel
Hi, I am using the HaplotypeCaller (GATK 4.4.0.0). When I look at the input BAM file in IGV, I expect the variant NC_000015.9:g.48760182_48760185delinsGGGT. However, HaplotypeCaller reports NC_0000...