Larry S
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Activity overview
Latest activity by Larry S-
Larry S commented,
Hi Genevieve Brandt (she/her). I uploaded a tar file following these instructions: https://gatk.broadinstitute.org/hc/en-us/articles/360035889671. Look for the file: LarryS_FilterMutectCallsGenerat...
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Larry S commented,
Thank you very much, Genevieve Brandt (she/her).
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Larry S commented,
Hi Genevieve Brandt (she/her). Thank you for the update. I'll follow this thread to see if there are updates. Thank you again, Larry.
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Larry S commented,
Hi Genevieve Brandt (she/her), Has there been any update on this matter? I haven't seen a response on the github thread either. Any advice? Thanks, Larry.
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Larry S commented,
Hi Genevieve Brandt (she/her), I tried running the same analysis with the latest version of GATK, and wanted to confirm that the same error exists in version 4.1.8.1. Thanks for your help, Larry.
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Larry S commented,
Thanks Genevieve Brandt (she/her). I'll follow the github link and this thread for any updates. Thanks again, Larry.
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Larry S commented,
Hi Genevieve Brandt (she/her), thanks for getting back to me. Yes, I've tried version 4.1.8.1 as well and got the same error on a different bam file. I can try version 4.1.8.1 on all the files to c...
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Larry S created a post,
Error running FilterMutectCalls: alpha must be greater than 0 but got NaN
I'm trying to run Mutect2 with mitochondrial mode and ERC BP_RESOLUTION and then FilterMutectCalls. I don't know if it's just not possible to do so, but it seems to work ok for about 90% of my file...