Rachel Turba
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Activity overview
Latest activity by Rachel Turba-
Rachel Turba commented,
Is there a reason why would someone choose to --set-gt-to-nocall instead of --exclude-filtered from the file? I can see the benefit of the later making the file smaller, but what would be the benef...
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Rachel Turba commented,
Ah, no! Nevermind… I've realized the problem was with the annotation file that did not contain the new chromosome. Sorry for this, but hopefully this will help some other lost soul like me in the f...
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Rachel Turba commented,
Do you mean like XY and XX? I'm almost sure this is the case. So yeah, it makes sense that coverage of X would drop by half in males, duh. And they do recombine, but crossing over is suppressed in ...
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Rachel Turba commented,
Hello, I am having a curious issue when aligning my reads to the newer reference of the threespine stickleback, which has a chrY added to it. After following the steps here, I get zero reads aligne...