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wiki97

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  • Somatic Structure Variation on exome-seq data

    1. Community
    2. New User Advice

    category of my question: a)How do I (......)? Hi, I am new to GATK exome-seq and would be grateful for any suggestions :) I am planning to use GATK4 to perform Structure Variation analysis on whole...

    • wiki97
    • Edited
    • 2 followers
    • 1 comment
    • 0 votes

  • MuTect2 annotations

    Answered
    1. Community
    2. General Discussion

    Category for my question: "d) Where do I find (......)?"   Hi, I am new to exome-seq and would be grateful for any suggestions :)  I want to check coverage for variants called with MuTect2 (GATK 4....

    • wiki97
    • 4 followers
    • 9 comments
    • 0 votes

  • VariantAnnotator QualByDepth - no error and no annotation..

    1. Community
    2. Somatic

    Hi, I am new to exome-seq and would be grateful for any help :) I want to use VariantAnnotator to annotate variants with QualByDepth, variants were called with MuTect2. I do not get any error, howe...

    • wiki97
    • 2 followers
    • 10 comments
    • 0 votes