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Ana Marija

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  • error while running gatk GenotypeConcordance

    1. Community
    2. Other

    If you are seeing an error, please provide(REQUIRED) : a) GATK version used: gatk-4.1.8.1b) Exact command used: gatk GenotypeConcordance -TRUTH_VCF new.vcf.gz -TRUTH_SAMPLE 0_fam0110_G110 -CALL_SAM...

    • Ana Marija
    • 2 followers
    • 2 comments
    • 0 votes

  • How to run GenotypeConcordance

    1. Community
    2. Other

    If you are seeing an error, please provide(REQUIRED) : a) GATK version used: picard-2.23.4b) Exact command used: c) Entire error log: 10:36:10.170 INFO NativeLibraryLoader - Loading libgkl_compress...

    • Ana Marija
    • Edited
    • 2 followers
    • 19 comments
    • 0 votes

  • Where and how I can get GenomeAnalysisTK.jar script?

    1. Community
    2. Other

    If you are seeing an error, please provide(REQUIRED) : a) GATK version used: gatk-4.1.8.1b) Exact command used: unzip gatk-4.1.8.1.zipc) Entire error log: If not an error, choose a category for you...

    • Ana Marija
    • 2 followers
    • 1 comment
    • 0 votes

  • how to interpret results of gatk Concordance

    Answered
    1. Community
    2. General Discussion

    If you are seeing an error, please provide(REQUIRED) : a) GATK version used: b) Exact command used: c) Entire error log: If not an error, choose a category for your question(REQUIRED):a)How do I (....

    • Ana Marija
    • 3 followers
    • 7 comments
    • 0 votes