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Samantha Zarate

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Recent activity by Samantha Zarate Sort by recent activity Recent activity Votes

  • VariantEval IndexOutOfBoundsException

    Answered
    1. Community
    2. General Discussion

    a) GATK version used: v4.1.9b) Exact command used: /gatk-4.1.9.0/gatk-package-4.1.9.0-local.jar \ VariantEval \ -R /$PATH_TO_REFERENCE/chm13/t2t-chm13.20200921.withGRCh38chrY.chrEBV.chrYKI270...

    • Samantha Zarate
    • Edited
    • 2 followers
    • 6 comments
    • 0 votes

  • Using GenotypeGVCFs with GenomicsDB

    1. Community
    2. Germline

    Hello, I am using Terra to run GenotypeGVCFs on a GenomicsDB that exists in Google Cloud and therefore is a `gs://` URI. I generated it by using `GenomicsDBImport` with the output specified as `gs:...

    • Samantha Zarate
    • Edited
    • 2 followers
    • 2 comments
    • 0 votes