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CommentsRecent activity by Begonia_pavonina Sort by recent activity
As Degang Wu and Sam Khalouei I encounter several difficulties with the spanning or overlapping deletion allele notation (*). It is not recognised by downstream analysis tools, in my case the ANGSD...
I decided to use GnarlyGenotyper instead of GenomicsDBImport, as the number of genotypes for this last one is limited to 50. A GATK team member as advised to use GnarlyGenotyper in the link below. ...
GenomicsDBImport seem to freeze when used with reference genome with numerous or larger scaffolds/pseudo chromosomes. I got an user error related to the number of intervals which was above 100. I h...
Hello Genevieve, it is great to have kept old post in the Legacy GATK forum! Thanks for the link!
This link is broken: The human genome training, truth and known resource datasets that are used in our Best Practices workflow applied to human data are all available from our Resource Bundle. A li...
Argh, too bad the link is broken now! Would you have any other link to the answer?