Nils Homer
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Activity overview
Latest activity by Nils Homer-
Nils Homer commented,
Any way to override this in the config?https://github.com/GenomicsDB/GenomicsDB/blob/2225b6e19d18cbcf98be52fac4529d9156ba7948/src/main/cpp/src/config/genomicsdb_config_base.cc#L59
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Nils Homer commented,
It looks like HTSJDK has the limit: https://github.com/samtools/htsjdk/blob/bfb584ed191efdb7b73329f576c4245fc42caf6d/src/main/java/htsjdk/variant/variantcontext/GenotypeLikelihoods.java#L58 Here's ...
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Nils Homer created a post,
GenomicsDBImport: Attempting to genotype more than 50 alleles
AnsweredI'm joint calling ~10K samples, where I expected there to be MANY possible alleles/genotypes. How do I increase the # of alleles supported by GenomicsDBImport? Perhaps this one? --genomicsdb-segm...
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Nils Homer created a post,
GenomicsDBImport: has too many genotypes in the combined VCF record
I'm joint calling ~10K samples, where I expected there to be MANY possible alleles/genotypes. How do I increase the # of alleles supported by GenomicsDBImport? Perhaps this one? --genomicsdb-segm...