Avatar

Uday Evani

Follow
  • Total activity 19
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 0
  • Subscriptions 3

Posts

Recent activity by Uday Evani Sort by recent activity Recent activity Votes

  • Missing RawGtCount annoation from GenotypeGVCF output

    1. Community
    2. Germline

    The GenotypeGVCF task in the UltimaGenomicsJointGenotyping.wdl completes successfully but does not add the RawGtCount annotation to the VCF because of which the next step, CalculateAverageAnnotatio...

    • Uday Evani
    • Edited
    • 2 followers
    • 19 comments
    • 0 votes

  • QualByDepth documentation issue

    Answered
    1. Community
    2. Documentation Questions

    Hi, QualByDepth documentation mentions the QUAL value is divided by Allele Depth (AD) whereas it's actually divided by Depth (DP). AD sounds misleading because there is an FORMAT field AD which ref...

    • Uday Evani
    • 3 followers
    • 18 comments
    • 0 votes

  • SelectVariants ArrayIndexOutOfBoundsException: 3

    1. Community
    2. Germline

    Hi, We are running into ArrayIndexOutOfBounds exception while running SelectVariants. The variant calling is performed in a ploidy aware manner and so the input VCF contains a mix of haploid and di...

    • Uday Evani
    • 2 followers
    • 1 comment
    • 0 votes