neethukrishna Kausthubham
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Latest activity by neethukrishna Kausthubham-
neethukrishna Kausthubham created a post,
Interpretation of gene_summary output from DepthofCoverage
AnsweredHi, When I used the gene list from RefSeq and ran the DepthofCoverage on a test bam file, I got the output as follows. I wonder why the same gene names are getting repeated (referring to multiple t...
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neethukrishna Kausthubham commented,
Genevieve-Brandt-she-her, thank you for the reply. I was just going through the alt-aware alignment and I am not very clear how to deal with the downstream analysis. But gradually I may be able to ...
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neethukrishna Kausthubham created a post,
Map reads to a reference with alternate contigs like GRCH38 using GATK4
Hi, We are in process of shifting our in-house pipeline for exome sequencing data analysis and variant calling based on GRCh38 and we would like to do alt-aware alignment for the same. I have gone ...