chrl
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GenomeStrip: CNVs in segmentally duplicated regions
AnsweredHi, Version: Genome STRiP Release 2.00.1982 I have used the GenomeStrip tools SVPreprocess and CNVDiscoveryPipeline to call CNVs from WGS data, but it seems that no calls are made for segmentally d...
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Mulitple mapped reads in germline CNV caller (GermlineCNVCaller)
AnsweredI have been running GermlineCNVCaller on targeted sequencing (mainly exons) data following the How to (https://gatk.broadinstitute.org/hc/en-us/articles/360035531152--How-to-Call-common-and-rare-ge...