chrl
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Activity overview
Latest activity by chrl-
chrl commented,
Thanks Bob Handsaker,I wasn't aware of the SegDupDiscoveryPipeline.q pipeline, but I was able to run the analysis with the human_g1k_v37 segdup files that you provided, and it seems that it worked ...
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chrl created a post,
GenomeStrip: CNVs in segmentally duplicated regions
AnsweredHi, Version: Genome STRiP Release 2.00.1982 I have used the GenomeStrip tools SVPreprocess and CNVDiscoveryPipeline to call CNVs from WGS data, but it seems that no calls are made for segmentally d...
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chrl created a post,
Mulitple mapped reads in germline CNV caller (GermlineCNVCaller)
AnsweredI have been running GermlineCNVCaller on targeted sequencing (mainly exons) data following the How to (https://gatk.broadinstitute.org/hc/en-us/articles/360035531152--How-to-Call-common-and-rare-ge...