Avatar

Leore Nehemie Bensabath

Follow
  • Total activity 9
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 2
  • Subscriptions 2

Posts

Recent activity by Leore Nehemie Bensabath Sort by recent activity Recent activity Votes

  • Mutect2: NuMTs filtering on RNA-seq

    Answered
    1. Community
    2. Other

    Hi GATK Team,  I am using Mutect2 in mitochondrial mode on rat RNA-seq data (I don't have WGS data available).  It is not super clear to me if filtering NuMTs with the flag --autosomale-coverage of...

    • Leore Nehemie Bensabath
    • 3 followers
    • 2 comments
    • 0 votes

  • Dosages with Mutect2

    1. Community
    2. Other

    a) GATK version used : gatk-4.1.3.0b) Exact GATK commands used : gatk Mutect2 -R ref.fa -L chrM --mitochondria-mode -I input.bam -O output.vcf gatk FilterMutectCalls -R ref.fa -autosomal-coverage 1...

    • Leore Nehemie Bensabath
    • 3 followers
    • 6 comments
    • 0 votes