Michelle Lian
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Recent activity by Michelle Lian Sort by recent activity-
Advice how to split exome samples for germline CNV
Hello there, I'm planning to run the germline CNV pipeline for 4000 cases and 900 controls. This WES dataset is sequenced on 2 different exome-capture kits. Would like to seek advice:1) How may I s...
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Check on "m2_extra_args", "m2_extra_filtering_args" used in mitochondria pipeline
AnsweredHi GATK team, I'm exploring on the mitochondrial pipeline. In particular, at the step of using MuTect2 at CallMT step (see also AlignAndCall wdl), I noticed "m2_extra_args" are being used but could...