Michelle Lian
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Activity overview
Latest activity by Michelle Lian-
Michelle Lian commented,
Hi @Laura Gauthier, Thank you so much for the clarifications. I'm more sure what to do for qns #2 - #5. As for #1, I have more questions to seek your expert insights. a) considering there are 2 di...
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Michelle Lian created a post,
Advice how to split exome samples for germline CNV
Hello there, I'm planning to run the germline CNV pipeline for 4000 cases and 900 controls. This WES dataset is sequenced on 2 different exome-capture kits. Would like to seek advice:1) How may I s...
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Michelle Lian created a post,
Check on "m2_extra_args", "m2_extra_filtering_args" used in mitochondria pipeline
AnsweredHi GATK team, I'm exploring on the mitochondrial pipeline. In particular, at the step of using MuTect2 at CallMT step (see also AlignAndCall wdl), I noticed "m2_extra_args" are being used but could...
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Michelle Lian commented,
Hi there, I'm using hg19 and wondering how may i create the shifted chrM fasta? Thank you so much for the kind help. Best regards, Michelle