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Does the CN with LQ need to be deleted?
Hello Is the CN with LQ in the svgenotype.vcf file reliable? Does it need to be deleted in subsequent analysis? Such as calculating the coefficient of variation .Or after the default parame...
How to filter the results of svgenotype
dear For self-pollinated crops, the CN should be at intervals of 2, but there are some sites where the CN is 3, 5, 11, how should I deal with these data? Next, I want to make some associations of ...
ERROR MESSAGE: No gender data for sample:sample7
hello for Glycine.max,a self-pollinated pants and has no genders. when run svdiscovery pipeline,always error:No gender data,but when i add -genderMapFile $genderfile ,no error , but when i run svdi...
Unable to load library 'lsf': liblsf.so: and Unable to submit job: denied(CNVdiscovery)
Hello, I am trying to run CNVdiscovery pipeline by using data of human_b36_chr1.fasta, I got the following error ,and attach my script, when i run it without -jobRunner Drmaa -gatkJobRunner Drmaa ,...
How to set the length when make a mask fasta file for Glycine_max.Glycine_max_v2.0.dna.fa
Hello, I am trying to make a mask fasta file for Glycine_max.Glycine_max_v2.0.dna.fa,but i don't know that How to set the length,can you help me.