termius
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Activity overview
Latest activity by termius-
termius commented,
hello for [One common way to do association tests is to test the association of copy number (as a continuous quantity) to phenotype],i don't understand , Which software can test the corre...
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termius created a post,
Does the CN with LQ need to be deleted?
Hello Is the CN with LQ in the svgenotype.vcf file reliable? Does it need to be deleted in subsequent analysis? Such as calculating the coefficient of variation .Or after the default parame...
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termius commented,
Hello ###example 20 1009500 CNV_20_1009500_1022750 T <CNV> . PASS END=1022750;GCFRACTION=0.33;GCLENGTH=13251;GLALTFREQ=NA;GLALTSUM=0.000;GLHETSUM=0.000;GLINBREEDINGCOEFF=NA;GLREFFREQ=NA;GLREFSUM=0...
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termius created a post,
How to filter the results of svgenotype
dear For self-pollinated crops, the CN should be at intervals of 2, but there are some sites where the CN is 3, 5, 11, how should I deal with these data? Next, I want to make some associations of ...
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termius commented,
for ./chr1/RUN/metadata/sample_gender.report.txt ,It's an empty file, nothing.
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termius commented,
using svdiscovery pipeline for version svtoolkit_2.00.1949
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termius created a post,
ERROR MESSAGE: No gender data for sample:sample7
hello for Glycine.max,a self-pollinated pants and has no genders. when run svdiscovery pipeline,always error:No gender data,but when i add -genderMapFile $genderfile ,no error , but when i run svdi...
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termius created a post,
Unable to load library 'lsf': liblsf.so: and Unable to submit job: denied(CNVdiscovery)
Hello, I am trying to run CNVdiscovery pipeline by using data of human_b36_chr1.fasta, I got the following error ,and attach my script, when i run it without -jobRunner Drmaa -gatkJobRunner Drmaa ,...
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termius created a post,
How to set the length when make a mask fasta file for Glycine_max.Glycine_max_v2.0.dna.fa
Hello, I am trying to make a mask fasta file for Glycine_max.Glycine_max_v2.0.dna.fa,but i don't know that How to set the length,can you help me.