Lourdes Rosano
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Activity overview
Latest activity by Lourdes Rosano-
Lourdes Rosano commented,
Hi Kevin Donnelly,We are also working with gCNV on sequencing data from a targeted gene panel. We wanted to ask you, since our analyses sound very similar: did you manage to gain any insights about...
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Lourdes Rosano commented,
Hi Genevieve Brandt, thank you for the suggestion. We repeated the complete gCNV tutorial now using GATK version 4.1.8.0, however we keep seeing the same issue there as well (the resulting VCFs are...
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Lourdes Rosano commented,
Hi Genevieve Brandt, thank you for the fast reply. Yes, we believe the error is occurring at the PostprocessGermlineCNVCalls step of the workflow, since we observe the discrepancy between the inter...
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Lourdes Rosano created a post,
GATK4.1.6.0 gCNV inconsistent CNV calls in intervals and segments vcfs
Hello, We are using GATK v4.1.6.0 to reproduce the gCNV caller tutorial (see https://gatk.broadinstitute.org/hc/en-us/articles/360035531152--How-to-Call-common-and-rare-germline-copy-number-variant...