zdr j
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Error running mutect2 on SAM files remapped to hg38 (original reads were aligned to hg19).
AnsweredIf you are seeing an error, please provide(REQUIRED) : a) GATK version used: latest version b) Exact command used: c) Entire error log: Hello, I have a problem in running mutect2 and I would be g...
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mutect2 error: "Unknown file is malformed: Could not read sequence dictionary from given fasta file refereces.dict"
AnsweredHellor I am extremely in need of your help to figure out the stubborn error I face with GATK mutect2 I face an error saying:"Unknown file is malformed: Could not read sequence dictionary from given...
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How to use picard for batch sam to bam conversion
Can you please provide a) GATK version used b) Exact GATK commands used c) The entire error log if applicable. I have been using the following command for sam to bam conversion using picard; howeve...
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erro running "gatk seq-format-validation workflow"
Hello I would be extremely grateful if you could help me find the problem, I ran the following command inside docker GATK container in a local machine mac pro, and cannot find the " test.validation...