Valentin
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MitochondriaPipeline on merged Bams
Hi everyone, i'm trying to analyse a single cell ATAC-seq dataset of bams with ~2000 cells/bam files, using the MitochondriaPipeline. While only ~600 cells or bams interest me, i figured it's near...
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mitochondria_m2_wdl: MitochondriaPipeline Issues
Hey everyone, i'm student of the ExBio Lab of TUM & new to using GATK. I'm having issues with running the Mitochondrial Pipeline locally. Versions: Cromwell: cromwell-51.jar GATK: gatk.4.1.8.0 Com...