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Valentin

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  • MitochondriaPipeline on merged Bams

    Hi everyone,  i'm trying to analyse a single cell ATAC-seq dataset of bams with ~2000 cells/bam files, using the MitochondriaPipeline. While only ~600 cells or bams interest me, i figured it's near...

  • mitochondria_m2_wdl: MitochondriaPipeline Issues

    Hey everyone,  i'm student of the ExBio Lab of TUM & new to using GATK. I'm having issues with running the Mitochondrial Pipeline locally. Versions: Cromwell: cromwell-51.jar GATK: gatk.4.1.8.0 Com...