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3. GATK GenotypeGVCFs miss a real Insertion

I mean vcf only have mutations ##source=SelectVariants#CHROM  POS     ID      REF     ALT     QUAL    FILTER  INFO    FORMAT  CrSTM-CRI-Fruit1_FDSW210283057-1r       CrSTM-CRI-Fruit2_FDSW210283058-...

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• touyupang
• March 03, 2022 01:45
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3. GATK GenotypeGVCFs miss a real Insertion

gvcf:REF     305     .       A       <NON_REF>       .       .       .       GT:AD:DP:GQ:PL  .:3919,2:3921:99:0,1800 .:4229,0:4229:99:0,1800 .:3469,5:3474:99:0,1800 .:3619,31:3650:99:0,1800REF     ...

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• touyupang
• March 02, 2022 08:28
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3. GATK GenotypeGVCFs miss a real Insertion

the result in g.vcf and vcf: g.vcf : REF     314     .       CAGG    C,CAAGG,CTAAGG,CGAGG,AAGG,CGG,CAAAGG,<NON_REF>  .       .       BaseQRankSum=-2.174e+00;DP=14411;MQRankSum=-1.870e-01;RAW_MQandD...

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• touyupang
• February 21, 2022 00:47
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