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touyupang

Total activity 7
Last activity March 03, 2022 01:45
Member since July 01, 2020 05:23

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Latest activity by touyupang

touyupang commented, March 03, 2022 01:45
I mean vcf only have mutations ##source=SelectVariants#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT CrSTM-CRI-Fruit1_FDSW210283057-1r CrSTM-CRI-Fruit2_FDSW210283058-...
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- touyupang
- March 03, 2022 01:45
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touyupang commented, March 02, 2022 08:28
gvcf:REF 305 . A <NON_REF> . . . GT:AD:DP:GQ:PL .:3919,2:3921:99:0,1800 .:4229,0:4229:99:0,1800 .:3469,5:3474:99:0,1800 .:3619,31:3650:99:0,1800REF ...
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- touyupang
- March 02, 2022 08:28
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touyupang commented, February 21, 2022 00:47
the result in g.vcf and vcf: g.vcf : REF 314 . CAGG C,CAAGG,CTAAGG,CGAGG,AAGG,CGG,CAAAGG,<NON_REF> . . BaseQRankSum=-2.174e+00;DP=14411;MQRankSum=-1.870e-01;RAW_MQandD...
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- touyupang
- February 21, 2022 00:47
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touyupang created a post, February 18, 2022 07:45
GATK GenotypeGVCFs miss a real Insertion
Answered
1. Community
2. Documentation Questions
GATK 4.2.0.0 I used HaplotypeCaller(-ERC GVCF）: /mnt/nas2/biosoft/miniconda3/envs/gatk4/bin/gatk --java-options -Xmx4G HaplotypeCaller -I /mnt/nas1/yangjy/lifei/TK-BJ-2021-0818-005/Result/SNP_Analy...
- touyupang
- February 18, 2022 07:45
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- 6 comments
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touyupang created a post, July 01, 2020 05:23
gatk3-register
1. Community
2. Other
I used GATK3.8.7.where did the "GenomeAnalysisTK[-3.8.tar.bz2|.jar]" go ?
- touyupang
- July 01, 2020 05:23
- 2 followers
- 1 comment
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