Genevieve Brandt (she/her)
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Recent activity by Genevieve Brandt (she/her) Sort by recent activity-
Hi Aziz, We haven't heard from you in a while so we're going to close out this ticket in our system. If you still require assistance, simply respond to this thread and we'll be happy to pick up whe...
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Great news! Thank you for posting your solution Mohammad Deen Hayatu!
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It looks like you didn't change the agg_large_disk parameter to 800. Could you try that again?
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Good idea, thank you for mentioning that it could be more clear. The tool docs are maintained by the developer team so I have created a ticket so that they can update the description: https://githu...
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Hi Mohammad Deen Hayatu, If GATK is having a hard time finding the dictionary, I would recommend using GATK to create an updated sequence dictionary and then trying to run the tool again. You can ...
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Hi Aziz, Thank you for writing into the GATK forum! It looks like there is an issue in one of your bam inputs: /scratch/brown/aebrahi/regia_ref2/all_bam/Jola-4344_aligned_dedup.bam has invalid unco...
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Hi Maxwell, We haven't heard from you in a while so we're going to close out this ticket in our system. If you still require assistance, simply respond to this thread and we'll be happy to pick up ...
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Hi Jakub, We haven't heard from you in a while so we're going to close out this ticket in our system. If you still require assistance, simply respond to this thread and we'll be happy to pick up wh...
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Hi Anna, We haven't heard from you in a while so we're going to close out this ticket in our system. If you still require assistance, simply respond to this thread and we'll be happy to pick up whe...
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Hi Jiayi, We haven't heard from you in a while so we're going to close out this ticket in our system. If you still require assistance, simply respond to this thread and we'll be happy to pick up wh...