Genevieve Brandt (she/her)
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Activity overview
Latest activity by Genevieve Brandt (she/her)-
Genevieve Brandt (she/her) commented,
One of the issues may be with your ref_flat file. The coding region start and end are the same value at the end of the transcript. Here is a link to more information about the ref_flat file format,...
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Genevieve Brandt (she/her) commented,
Good to hear!
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Genevieve Brandt (she/her) commented,
Yes, that's true. It is searching for reads marked with the 0x400 flag.
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Genevieve Brandt (she/her) commented,
I see. Could you make a conda environment outside of the cluster and verify that this issue persists when following the suggestions in that post?
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Genevieve Brandt (she/her) commented,
Hi Quentin Chartreux, I think the README is not correctly up to date. I'll get that fixed, thank you for pointing it out! You should use the masked reference to run DRAGMAP. Illumina is planning o...
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Genevieve Brandt (she/her) commented,
Thanks for posting this Seyed Mehdi Esmaeili-Fard!
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Genevieve Brandt (she/her) created a post,
Any comment on panel seq in regards to downstream processing for DRAGEN-GATK?
Any comment on panel seq in regards to downstream processing for DRAGEN-GATK? "I'm not sure entirely what the user is referencing. It sounds like a use case that is not something we have focused on...
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Genevieve Brandt (she/her) commented,
Thank you! I'll let you know when I have an update.
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Genevieve Brandt (she/her) commented,
Hi rcorbett, Could you clarify if you think these results from CollectRnaSeqMetrics is incorrect for the input bams or if you are asking why your data is aligning to UTRs instead of ribosomal inter...
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Genevieve Brandt (she/her) commented,
Hi rokkineste, Yes, I agree that this topic is confusing! It can really depend on different variables in each case. Each read group should be equal to each smallest subdivision that you have. I was...