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Stephanie Hoyt

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Latest activity by Stephanie Hoyt
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    Stephanie Hoyt created a post,

    Cromwell: can't find file ID

    I am using Cromwell to test a CWL implementation of the GATK somatic CNV pipeline. I am currently getting the following error (full log at the end):   `` Cannot find a tool or workflow with ID file...

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    Stephanie Hoyt commented,

    Hi, The listed PON's are vcf format, but the GATK copy number pipelines require an hdf5 file. Is there another processing step we need to do before we can use these files?   Thanks.