Stephanie Hoyt

  • Total activity 6
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 0
  • Subscriptions 3

Activity overview

Latest activity by Stephanie Hoyt
  • Avatar

    Stephanie Hoyt commented,

    Hello, Is there a publicly available 1000 genome HDF5 PON anywhere? We do not have enough samples to generate a PON ourselves with CreateReadCountPanelOfNormals.  Thank you, Stephanie

  • Avatar

    Stephanie Hoyt created a post,

    Cromwell: can't find file ID

    I am using Cromwell to test a CWL implementation of the GATK somatic CNV pipeline. I am currently getting the following error (full log at the end):   `` Cannot find a tool or workflow with ID file...

  • Avatar

    Stephanie Hoyt commented,

    Hi, The listed PON's are vcf format, but the GATK copy number pipelines require an hdf5 file. Is there another processing step we need to do before we can use these files?   Thanks.