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Vincent Appiah

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Recent activity by Vincent Appiah Sort by recent activity Recent activity Votes

  • The same number of SNPS and INDELS identified for all samples after joint genotyping

    Answered
    1. Community
    2. Germline

    Dear GATK team, I performed joint variant calling on 46 whole exome samples. After running CombineGVCFs and GenotypeGVCfs, I realized the number of variants was the same for each sample. Is this an...

    • Vincent Appiah
    • Edited
    • 3 followers
    • 12 comments
    • 0 votes

  • Creating Panel of Normals Error

    1. Community
    2. Somatic

      Hello GATK,   I am creating a panel of normals from whole exome data from 1000 genomes project.  I used a custom interval list which i created successfully using hg19.fa from UCSC database (the o...

    • Vincent Appiah
    • 3 followers
    • 3 comments
    • 0 votes

  • BedToIntervalList Error

    1. Community
    2. Somatic

    Hello Team, I am running gatk  4.1.1.0 BedToIntervalList command on my bedfile. The interval list will be used to create a panel of normals for  variant calling on my whole exome sequence I tried w...

    • Vincent Appiah
    • 2 followers
    • 2 comments
    • 0 votes