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Vincent Appiah

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  • The same number of SNPS and INDELS identified for all samples after joint genotyping

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    Dear GATK team, I performed joint variant calling on 46 whole exome samples. After running CombineGVCFs and GenotypeGVCfs, I realized the number of variants was the same for each sample. Is this an...

  • Creating Panel of Normals Error

      Hello GATK,   I am creating a panel of normals from whole exome data from 1000 genomes project.  I used a custom interval list which i created successfully using hg19.fa from UCSC database (the o...

  • BedToIntervalList Error

    Hello Team, I am running gatk  4.1.1.0 BedToIntervalList command on my bedfile. The interval list will be used to create a panel of normals for  variant calling on my whole exome sequence I tried w...