Steven Fleck
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Activity overview
Latest activity by Steven Fleck-
Steven Fleck commented,
I'm currently working with a VCF for a group a 292 plant samples. The current SNPs were created by mapping to a reference assembly with 1542 contigs, but I want to lift those over to the new Hi-C s...
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Steven Fleck commented,
I had read that page, but still didn't understand completely. A colleague was able to help out. If anyone else comes to this post for clarification: for two intervals, I needed to submit 2 separate...
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Steven Fleck created a post,
GATK 4 HaplotypeCaller --intervals, -L usage for non-human genomes
Version I'm using: GATK/4.1.6.0 (though I'm planning on switching to the most recent version) Command (-L is currently blank):gatk --java-options "-Xmx40g" HaplotypeCaller -pairHMM AVX_LOGLESS_CACH...