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Roberto Sirica

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Latest activity by Roberto Sirica
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    Roberto Sirica commented,

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    3. Mutect2: mitochondria mode weird

    I annotated the vcf with VEP, aa_change is a field from vep annotation, I paste the line from the original Mutect file : chrM 3461 . G A DP=91;ECNT=6;MBQ=37,37;MFRL=171,209;MMQ=60,60;MPOS=36;OCM=0;...

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    Roberto Sirica created a post,

    Mutect2: mitochondria mode weird

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    Hello all, I'm trying to call variants for mitochondrial samples using gatk v.4.1.2.0 with Mutect2 mitochondria mode, with the command line below: java -jar gatk Mutect2 -R genome.fa --mitochondria...

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