wd
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Latest activity by wd-
wd commented,
Update on the problem above: Added "-DGATK_STACKTRACE_ON_USER_EXCEPTION=true" to --java-options Apparently "A USER ERROR has occurred: Couldn't create GenomicsDBFeatureReader" is caused by "Cause...
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wd commented,
Update on the problem above. As smaller batches or selecting only one chromosome (using intervals option (-L)) did not speed up CombineGVCF, I decided to try GenomicsDBimport. I successfully create...
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wd created a post,
CombineGVCF slowing down at certain region on chromosome 1
Hi I have 36 gvcf (for a non-model arthropod species) and i would like to combine them using CombineGVCF. However, at a certain region on chromsome 1, CombineGVCF starts to become extremely slow (p...