Enrico Cocchi

  • Total activity 33
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 1
  • Subscriptions 14


Recent activity by Enrico Cocchi Sort by recent activity Recent activity Votes
  • Mutect2 PoN - GenomicsDBImport creates empty DB


    I am trying to follow GATK 4.2.0 best-practice guidelines for Mutect2 PoN creation. I called variants in my samples as recommended with: gatk Mutect2 \-R ${REF} \-L ${EXOME_INPUT_INTERVALS} \-I ${...

  • GATK Mutect2 tumor vs. normal sample


    a) How do I compared somatic variants called through a PoN file with the latest best-practive-guidelines between a normal-sample and a tumor-sample in order to know which one are characteristics of...

  • Mutect2 missing variant

    Hi, I am using GATK and I noticed a strange behavior by Mutect2. The variant 13-33329989-TGTCTC-T is called if the BED file contains: 13 33329959 33330170 but not if it contains: 13 3...