Ranjan J. Sarma
- Total activity 18
- Last activity
- Member since
- Following 2 users
- Followed by 0 users
- Votes 4
- Subscriptions 8
Activity overview
Latest activity by Ranjan J. Sarma-
Ranjan J. Sarma created a post,
Panel of Normals creation error: GenomicsDBImport does not support GVCFs with MNPs
AnsweredREQUIRED for all errors and issues: a) GATK version used: 4.3.0.0b) Exact command used: Command to Create VCF: home/hp/Desktop/GenomicsApps/gatk*/gatk Mutect2 -R /home/hp/Desktop/reference_genome/h...
-
Ranjan J. Sarma commented,
Thank you for clearing my doubts. I will definitely go through the workflow now.
-
Ranjan J. Sarma commented,
Philipp Hähnel So, I have another doubt. Suppose, I run gatk Mutect2 using Tumor and matched normal. In that case, Can I use the Adjacent normal tissue samples as matched normal and PoN constructe...
-
Ranjan J. Sarma commented,
Thank you! I will try both ways and compare.
-
Ranjan J. Sarma commented,
Anthony DiCi Thank you for the essential suggestions. Philipp Hähnel Thank you for the quick response. I missed mentioning that 37 such samples were sequenced (Whole Exome) in Illumina HiSeq 4000 a...
-
Ranjan J. Sarma created a post,
Creating Panel of Normals (PoN) from Blood Sample of cancer patients
AnsweredHello, I am investigating somatic mutation in stomach cancer from 31 patients. I have the patients Tumor and adjacent normal tissues. Moreover, I have their blood samples including other patients'...