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3. (How to) Execute Workflows from the gatk-workflows Git Organization

Yes, please update this guide to reference the latest version of Cromwell. Running the version currently linked in this article (v33.1) led to an error when running processing-for-variant-discovery...

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• Peter Kilfeather
• February 15, 2023 14:50
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1. Community
2. Somatic
3. Somatic - Not cancer - RNA

Hi David Benjamin, thank you very much for this information! Since my original post, I have been gradually coming to a similar conclusion, which is reassuring! I am documenting what I have done bel...

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• Peter Kilfeather
• June 01, 2020 11:15
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• 1 vote

1. Community
2. Somatic
3. Somatic - Not cancer - RNA

Thanks for your help. I have I have two types of sample: Cell type-specific and brain region-derived (both samples are from the same brain region). For cell type-specific samples, I have one per m...

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• Peter Kilfeather
• May 18, 2020 07:15
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• 0 votes