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Manoj Kumar

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Recent activity by Manoj Kumar Sort by recent activity Recent activity Votes

  • Not getting vcf file

    1. Community
    2. Germline

    I am trying following commands to generate vcf file from HISAT2 generated alignment .sam file. I tried a lot but I am not able to figure out the issue. please advice. Command: ./gatk --java-options...

    • Manoj Kumar
    • 2 followers
    • 1 comment
    • 0 votes

  • ERROR while calling variants...

    1. Community
    2. Other

    I am using gatk-4.1.7.0 version with following command, however I am getting error. please advice.... Command: gatk-4.1.7.0$./gatk HaplotypeCaller -R /home/kumarm/allan-work/RNASEq-alignment/ref_se...

    • Manoj Kumar
    • Edited
    • 2 followers
    • 2 comments
    • 0 votes