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Yue Wang

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Latest activity by Yue Wang
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    Yue Wang commented,

    1. Community
    2. Non-Human
    3. Fungal mitochondrial variant calling

    Hi Megan, Thanks for the detailed reply. I will try to run BQSR. For the fungal mitogenome, it usually has thousands of copies, some introns, and heteroplasmy could exist. I think Mutect2 mitochond...

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    Yue Wang commented,

    1. Community
    2. Non-Human
    3. Fungal mitochondrial variant calling

    Another thing I notice is that mitochondria have very limited variants in their genomes. This species's mitogenome sizes are around 40kb. I can only found several variants in DRR022915 compared to ...

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    Yue Wang created a post,

    Fungal mitochondrial variant calling

    1. Community
    2. Non-Human

    Hi Megan,  Thanks for the quick response.Megan Shand I am working on fungal mitochondrial variants. I am wondering if the new mitochondrial pipeline is only for humans and I should use other tools ...

    • Yue Wang
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    Yue Wang commented,

    1. Community
    2. Documentation Questions
    3. GATK Best Practices Mitochondrial Analysis

    Hi~ I am working on fungal mitochondrial variants. I am wondering if the new mitochondrial pipeline is only for humans and I should use other tools like HaplotypeCaller or Mutect2 mitochondria mode...