Tyler Medina
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Activity overview
Latest activity by Tyler Medina-
Tyler Medina commented,
Can you explain what CpCG -> CpCA refers to in this context? I can't find any information in your documentation about what this refers to.
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Tyler Medina commented,
Hi again, I think I found my answer in Github open issue 5793. Long story short, looks like the QUAL score filtering is performed per-allele. Alleles that fail are removed, but the output QUAL scor...
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Tyler Medina commented,
Hi Bhanu, I've rerun a batch using GATK/4.1.7.0, and I'm still seeing the same effect. In this particular batch: 28 variants were 'missing' when run with my additional control sample. > of thes...
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Tyler Medina created a post,
GenotypeGVCFs -stand-call-conf filtering high-QUAL variants
I am comparing variant calls in a batch of 7 samples, with and without an additional control sample. The addition of this 8th sample alters the QUAL scores during genotyping, such that some variant...