xie186
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GATK-HaplotypeCaller results generate records with read depth of zero?
a) GATK version used: GATK/4.1.4.1b) Exact GATK commands used: gatk HaplotypeCaller -R Pfalciparum.genome.fasta -I recal_realn.bam -ploidy 2 -ERC GVCF --standard-min-confidence-threshold-for-calli...