xie186
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Latest activity by xie186-
xie186 commented,
It'll be helpful to report read coverage after filtering for each sample in the output of GenotypeGVCFs
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xie186 commented,
Thank you for your explanation, @Bhanu Gandham. I really appreciate it.
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xie186 created a post,
GATK-HaplotypeCaller results generate records with read depth of zero?
a) GATK version used: GATK/4.1.4.1b) Exact GATK commands used: gatk HaplotypeCaller -R Pfalciparum.genome.fasta -I recal_realn.bam -ploidy 2 -ERC GVCF --standard-min-confidence-threshold-for-calli...