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Robinn Teoh

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Recent activity by Robinn Teoh Sort by recent activity Recent activity Votes

  • [Repost] ReadGroup missing when Applying BQSR

    Answered
    1. Community
    2. Germline

    Dear all, I am currently using gatk4.1.9.0 to run BQSR on my sorted and deduped bam files, which I have had no problems with my previous 2 files, but having the error as stated below: Command inser...

    • Robinn Teoh
    • 3 followers
    • 44 comments
    • 0 votes

  • [Repost] ReadGroup missing when Applying BQSR

    1. Community
    2. Germline

    Dear all, I am currently using gatk4.1.9.0 to run BQSR on my sorted and deduped bam files, which I have had no problems with my previous 2 files, but having the error as stated below: Command inser...

    • Robinn Teoh
    • Edited
    • 3 followers
    • 3 comments
    • 0 votes

  • MarkDuplicatesSpark not working on Putty

    1. Community
    2. Non-Human

    Dear All, I am trying to run MarkDuplicatesSpark on a server using putty but I am getting errors with the logs below: a) GATK version is gatk4.1.9.0 b) command used ./gatk MarkDuplicatesSpark -I Ka...

    • Robinn Teoh
    • Edited
    • 2 followers
    • 1 comment
    • 0 votes