James White
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Activity overview
Latest activity by James White-
James White commented,
Himawari, Nothing is installed with conda env export --no-builds > gatkcondaenv.bac.ymlconda env create -n gatk -f gatkcondaenv.bac.yml because you had no environment to export. The first command...
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James White commented,
Samuel Lee, The creation of the env with the new yml file went smoothly on RHEL 6.6! Thanks for this. I assume it will work with gatk releases 4.1.6.0 and 4.1.7.0. Is this correct? Will the new y...
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James White commented,
Samuel Lee, Thanks for the quick response. Ok. I'll try the new yml with my current gatk-4.1.6.0 setup. Also, I just noticed that I am receiving email notifications. I must have missed the one ...
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James White commented,
Samuel Lee, Sorry for not replying earlier. I don't get email notifications for these, so I have to revisit the page on my own. I looked for some account settings of some sort... nothing. I'm a...
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James White commented,
Bhanu Gandham, Are there some tests that I can run to make sure the components that I have switched up will work? The only test, to my knowledge, only tests that the conda env python is up and ru...
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James White commented,
Carlos Luna I've fixed gatkcondaenv.yml with the most conservative changes by what was available to me from my conda channels. This is easily done with a $ conda search <package> for the problem p...
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James White created a post,
Broken: conda env create -n gatk -f gatkcondaenv.yml
OS: Red Hat Enterprise Linux Server release 6.6 (Santiago) gatk-4.1.6.0 miniconda 4.8.3 Instructions taken from https://gatk.broadinstitute.org/hc/en-us/articles/360035889851--How-to-Install-and-us...