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Kristian Unger

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Latest activity by Kristian Unger
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    Kristian Unger created a post,

    Error using output of ScatterIntervalsByNs by SplitIntervals

    1. Community
    2. Somatic

    Hi there, when building an interval file with ScatterIntervalsByNs on the hg38 reference the output leads to an error when fed to SplitIntervals because of "A USER ERROR has occurred: Badly formed ...

    • Kristian Unger
    • 2 followers
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    Kristian Unger commented,

    1. Community
    2. Other
    3. Cromwell GATK json list of files

    Super! Thank you! Look forward getting in touch with your collegue!

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    Kristian Unger created a post,

    Cromwell GATK json list of files

    1. Community
    2. Other

    I want to use GATK workflows such as seq-format-conversion on slurm. In order to apply the workflow on a pair of fastqs several parameters need to be defined in a json per file-pair. In the moment ...

    • Kristian Unger
    • 3 followers
    • 3 comments
    • 0 votes