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Determining Optimal Number of Samples to include in Panel of NormalAnswered
Hello, We have been following tutorial(s) 11682 and 11683 for sensitive detection of copy ratio alterations in benign tissue utilizing the PON sensitivity in place of a matched normal when one may ...
Sensitive Copy Ratio Pipeline compatibility with tool "mergeLevels"
Can you please provide a) GATK version used b) Exact GATK commands used c) The entire error log if applicable. Hello, my group and I are new to this field. I have been following tutorial(s) 11682 a...
Somatic copy ratio alterations in benign case samples
GATK 4.1.0 Hello I have been following tutorial(s) 11682 and 11683 for sensitive detection of copy ratio alterations in benign tissue. Previously we have used other tools, such as Mutect2, to look...