FM
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Activity overview
Latest activity by FM-
FM commented,
Hello Megan, I've tried Terra and a few other things and I'll tell you the results here. 1. Default demo data for NA12878.cram on Terra: Succeeded. 2. Running the above G97753.NA12878.bam data on T...
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FM commented,
Hello Megan, Thank you for your fast response. Based on your kind comments, I also checked the stderr file of BWA/MergeBamAlignment with the "non-shifted". In the file, I saw the exact same error l...
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FM commented,
Hi Megan, Thank you for your reply. I've posted the stderr file below. I've checked some of the mapped BAM files and they seemingly work well. I'm not sure what the reason for the error is. Do...
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FM commented,
Hello Megan, Thank you for your reply. I created a BAI by SAMTOOLS and then ran that program because there was no BAI file for the BAM file as you say.I found the file "G97753.NA12878.realigned.bwa...
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FM commented,
Hello Everyone,I tried mitochondrial variant calling on my local Mac using the latest WDL (using cromwell/docker/git of https://github.com/gatk-workflows/gatk4-mitochondria-pipeline, G97753.NA12878...