Mar Gonzàlez-Porta
- Total activity 11
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 4
Comments
Recent activity by Mar Gonzàlez-Porta Sort by recent activity-
Congratulations on this big milestone! Here a few questions from our team: Does DRAGEN-GATK support low-coverage WGS (5X-1X) / has that been tested? DRAGEN provides a forced genotyping setting to ...
-
Hi Brian Wiley, I used different input BAMs for the modeling vs. recalibration steps: (1) run BaseRecalibrator on a subsetted BAM with only autosomes; (2) run ApplyBQSR on the full BAM. Cheers
-
Hi Bhanu, Thanks for the response. Please keep us updated on testing outcomes on your end. Since this is such an early step within the analysis pipeline, it has the potential to have a major impact...
-
Hi Bhanu, Thanks for the feedback. Here the results of the follow-up analyses that you’ve suggested (slide 4): https://drive.google.com/open?id=1FPu6Fcq1-twjT_1ts2Di0ebizWvDUmBs Labels for items 1 ...
-
Hi Bhanu Gandham, Have you had the chance to follow up on this? I wonder if this is a trend specific to our dataset, have you seen a similar behaviour elsewhere? Many thanks,
-
Hi Bhanu Gandham, See slide 3 here: https://drive.google.com/open?id=1bun1U9OgNQfD8FQpmR75fWahcMeBFeer In a nutshell, I've re-launched BQSR with the following combinations: Keep input bam as is, b...