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Ryan Gimple

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Latest activity by Ryan Gimple
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    Ryan Gimple commented,

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    3. Panel of Normals Documentation

    Thanks for the information! I am using hg38 for my analyses. To be able to use the "Mutect2-WGS-panel-b37.vcf" file for my pipeline, do I need to perform a liftover step to hg38, or does this file ...

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    Ryan Gimple created a post,

    Panel of Normals Documentation

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    I had some questions about the pre-made panel of normals (PON) files in the Google Cloud Best Practices folder (https://console.cloud.google.com/storage/browser/gatk-best-practices/). It would be g...

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    Ryan Gimple commented,

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    3. Mutect2-exome-panel.vcf Not Found

    In case anyone else is looking for this file, I found it on this website: https://console.cloud.google.com/storage/browser/gatk-best-practices/somatic-b37/  

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    Ryan Gimple created a post,

    Mutect2-exome-panel.vcf Not Found

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    I cannot find the "Mutect2-exome-panel.vcf" file in the resource bundle for b37. Could you please advise about how I could access this resource to use as a panel of normals for Mutect2?   Thanks

    • Ryan Gimple
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