Geert Vandeweyer
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Latest activity by Geert Vandeweyer-
Geert Vandeweyer commented,
Thank you for looking into the problem !
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Geert Vandeweyer commented,
Genevieve Brandt (she/her) : I've uploaded the data to the FPT client. Name == HaplotypeCaller.unknown_alleles.tar.gz There's one of the unexpected alleles called in the provided region. Thanks fo...
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Geert Vandeweyer commented,
Yes, but I'll double check. If you can send me a private message, I can share the data. (Patient material)
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Geert Vandeweyer created a post,
Haplotypecaller 4.5.2.0 --alleles unexpected output
Answered- Output VCF file contains entries like below when '--alleles' is used: chr5 125894866 . C T Infinity . AC=0;AF=0.00;AN=2;DP=31;ExcessHet=0.0000;FS=0.000;M...