Danyue Wang

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Latest activity by Danyue Wang
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    Danyue Wang commented,

    Dear Gökalp Çelik: Thanks a lot for following up! Sometimes, more is less. I had tested the command and validated the results. And the reason is the parameter --min-base-quality-score 20 I found ...

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    Danyue Wang commented,

    Hi, Gökalp Çelik I tried the methods metioned by the documentation and remove the target region bed, but I couldn't find the right solution, and some of the information by '-debug' mode is as follo...

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    Danyue Wang created a post,

    Mutect2 output False Negative SNV result

    Hi, I found the Mutect2 could not get some expected positive SNVs, which had relative high AF and AD value. And I can get it by force calling with the parameter '--alleles ',  one of them is listed...