
BI_joy
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other reference in BaseRecalibrator known-sites option
If you are seeing an error, please provide(REQUIRED) : a) GATK version used: 4.1.8b) Exact command used: BaseRecalibrator c) Entire error log: A USER ERROR has occurred: Input files reference and f...
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I want to know sequence_group_intervals in fivedollar-genome-anlalysis pipeline
a) GATK version used gatk 4.1 b) Exact GATK commands used i want to know option -L in BaseRecalibrator Hi In fivedollar-genome-analysis pipeline. I ran BaseRecalibrator then I have a question -L o...
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error java.lang.ClassCastException: java.lang.Long cannot be cast to java.lang.Byte
Can you please provide a) GATK version used gatk 3.8 b) Exact GATK commands used java -Xmx4g -jar ../GenomeAnalysisTK.jar \ -T IndelRealigner \ -R $reference_fa_path/GRCh38_full_analysis_set_p...