BI_joy
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Latest activity by BI_joy-
BI_joy commented,
Genevieve Brandt (she/her) Thank you for letting me know.I will refer to it and study. thank you
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BI_joy commented,
add when I did LiftoverVcf, it has the error log ... INFO 2020-10-08 16:07:28 LiftOver Interval chr1:108359162-108359163 failed to match chain 1069 because intersection length 1 < minMatchSize 2.0 ...
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BI_joy created a post,
other reference in BaseRecalibrator known-sites option
If you are seeing an error, please provide(REQUIRED) : a) GATK version used: 4.1.8b) Exact command used: BaseRecalibrator c) Entire error log: A USER ERROR has occurred: Input files reference and f...
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BI_joy created a post,
I want to know sequence_group_intervals in fivedollar-genome-anlalysis pipeline
a) GATK version used gatk 4.1 b) Exact GATK commands used i want to know option -L in BaseRecalibrator Hi In fivedollar-genome-analysis pipeline. I ran BaseRecalibrator then I have a question -L o...
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BI_joy created a post,
error java.lang.ClassCastException: java.lang.Long cannot be cast to java.lang.Byte
Can you please provide a) GATK version used gatk 3.8 b) Exact GATK commands used java -Xmx4g -jar ../GenomeAnalysisTK.jar \ -T IndelRealigner \ -R $reference_fa_path/GRCh38_full_analysis_set_p...