Kelly Rabionet
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Activity overview
Latest activity by Kelly Rabionet-
Kelly Rabionet commented,
Hi, i encountered the same issue (malformed read starts with deletion) and a similar one (malformed read ends with deletion) on two different samples. These are the versions I am using: bwa-0.7.17 ...
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Kelly Rabionet commented,
Hi Bhanu, we have gone through these recommendations several times, we have also increased some of the thresholds to try to remove these variants, but, when considering all samples, even if they re...
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Kelly Rabionet created a post,
how to get rid of haplotypecaller variants caused by weird artificial haplotypes
HI, I am using GATK 4.1.2 I have panel sequencing data for about 700 samples, which i have aligned (BWA), duplicate-marked, base-quality recalibrated, etc. and called gvcf with haplotype caller in...